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  5. Azfi_s0008.g011315

Azfi_s0008.g011315 (ATREV3, REV3)


Aliases : ATREV3, REV3

Description : not classified & original description: CDS=841-2013


Gene families : OG0002006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002006_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0008.g011315

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00241740 EMB2780,... Cell cycle.interphase.DNA replication.elongation.DNA... 0.05 OrthoFinder output from all 47 species
AT5G63960 EMB2780 DNA binding;nucleotide binding;nucleic acid... 0.01 OrthoFinder output from all 47 species
Adi_g057535 EMB2780 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g11116 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Aop_g09717 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Aspi01Gene70665.t1 EMB2780, Aspi01Gene70665 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene72656.t1 EMB2780, Aspi01Gene72656 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene72661.t1 ATREV3, REV3,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000975 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Azfi_s1989.g108568 EMB2780 component *(POLD1) of DNA polymerase delta complex &... 0.06 OrthoFinder output from all 47 species
Cba_g02107 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.01 OrthoFinder output from all 47 species
Cba_g12027 EMB2780 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.29G084300.1 EMB2780, Ceric.29G084300 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Dde_g10520 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Dde_g51710 EMB2780 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os11g08330.1 EMB2780, LOC_Os11g08330 component POLD1 of DNA polymerase delta complex 0.02 OrthoFinder output from all 47 species
Len_g21254 EMB2780 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14841 EMB2780 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06298 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Pnu_g02483 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000722 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sam_g08942 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g25356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25588 No alias EC_2.7 transferase transferring phosphorus-containing... 0.01 OrthoFinder output from all 47 species
Sam_g35205 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52091 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21973 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Tin_g11079 EMB2780 not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR006134 DNA-dir_DNA_pol_B_multi_dom 199 387
No external refs found!