1. Home
  2. Species
  3. Azolla filiculoides
  4. Sequence
  5. Azfi_s0008.g011344

Azfi_s0008.g011344 (ATO)


Aliases : ATO

Description : component *(SF3A3) of splicing factor 3A complex & original description: CDS=224-1726


Gene families : OG0005469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005469_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0008.g011344

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000912.17 ATO RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Cre06.g297750 ATO RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
MA_10432243g0010 ATO component SF3A3 of splicing factor 3A complex 0.04 OrthoFinder output from all 47 species
Ppi_g14896 ATO component *(SF3A3) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Sam_g24778 No alias component *(SF3A3) of splicing factor 3A complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e020148_P003 ATO, Zm00001e020148 component SF3A3 of splicing factor 3A complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
CC GO:0005681 spliceosomal complex IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR021966 SF3a60_bindingd 81 106
IPR031774 SF3A3_dom 128 176
IPR024598 SF3a60/Prp9_C 381 500
No external refs found!