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  5. Azfi_s0016.g014262

Azfi_s0016.g014262


Description : not classified & original description: CDS=1-4500


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0016.g014262

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00064890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
Aev_g06729 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene30154.t1 Aspi01Gene30154 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34804.t1 Aspi01Gene34804 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63595.t1 EMB2261, Aspi01Gene63595 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20884 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.17G076500.1 Ceric.17G076500 not classified & original description: pacid=50617139... 0.05 OrthoFinder output from all 47 species
Ceric.23G032000.1 Ceric.23G032000 not classified & original description: pacid=50611416... 0.05 OrthoFinder output from all 47 species
GSVIVT01009574001 OSB1 Cell cycle.organelle machineries.DNA... 0.05 OrthoFinder output from all 47 species
Gb_31111 EMB2758 Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
LOC_Os11g45410.1 LOC_Os11g45410 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Len_g17706 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18788 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18911 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g48712 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10308 EMB2261 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g13680 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g23761 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38613 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g22252 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g08859 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000958 No alias not classified & original description: CDS=1-3216 0.03 OrthoFinder output from all 47 species
Sam_g27568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05225 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 1329 1373
IPR002885 Pentatricopeptide_repeat 1089 1129
IPR002885 Pentatricopeptide_repeat 487 532
IPR002885 Pentatricopeptide_repeat 386 432
IPR002885 Pentatricopeptide_repeat 185 231
IPR002885 Pentatricopeptide_repeat 1191 1237
IPR002885 Pentatricopeptide_repeat 587 634
IPR002885 Pentatricopeptide_repeat 285 333
IPR002885 Pentatricopeptide_repeat 85 131
IPR002885 Pentatricopeptide_repeat 989 1035
IPR002885 Pentatricopeptide_repeat 461 486
IPR002885 Pentatricopeptide_repeat 159 181
IPR002885 Pentatricopeptide_repeat 764 789
IPR002885 Pentatricopeptide_repeat 562 586
IPR002885 Pentatricopeptide_repeat 692 718
IPR002885 Pentatricopeptide_repeat 792 821
IPR002885 Pentatricopeptide_repeat 865 886
IPR002885 Pentatricopeptide_repeat 1401 1425
IPR002885 Pentatricopeptide_repeat 963 985
IPR002885 Pentatricopeptide_repeat 893 920
IPR002885 Pentatricopeptide_repeat 361 382
No external refs found!