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  5. Azfi_s0024.g020347

Azfi_s0024.g020347 (ATCHR12)


Aliases : ATCHR12

Description : SMARCA component *(SYD/BRM/MINU) & original description: CDS=1-3930


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0024.g020347

Target Alias Description ECC score Gene Family Method Actions
Aev_g04898 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13876 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ala_g11507 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Als_g06850 PKR1, CHR4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g20612 PKR1, CHR4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G006600.1 ATCHR12, Ceric.06G006600 SMARCA component *(SYD/BRM/MINU) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.36G015700.1 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000802.67 ATCHR12 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g21252 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.04 OrthoFinder output from all 47 species
Dcu_g03207 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.06 OrthoFinder output from all 47 species
Dcu_g03216 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Dcu_g19159 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Dcu_g38948 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05070 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Ehy_g10042 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.05 OrthoFinder output from all 47 species
Ehy_g15984 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01018218001 No alias Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
LOC_Os07g46590.1 CHR5, LOC_Os07g46590 chromatin remodeling factor (Chd1). component CHR5 of... 0.03 OrthoFinder output from all 47 species
Len_g08675 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Mp1g05480.1 CHR5 chromatin remodeling factor (Chd1). component CHR5 of... 0.02 OrthoFinder output from all 47 species
Mp2g26680.1 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.03 OrthoFinder output from all 47 species
Ore_g12901 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26462 No alias chromatin remodeling factor *(ALC1) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06697 No alias chromatin remodeling factor *(ALC1) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07046 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29220 No alias component *(CHR5) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Smo177985 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0042393 histone binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR029295 SnAC 1073 1137
IPR001650 Helicase_C 871 984
IPR000330 SNF2_N 562 850
No external refs found!