Aliases : RAB1C, ATRAB1C, ATRABD2C
Description : not classified & original description: CDS=1-543
Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Azfi_s0028.g023798 | |
| Cluster | HCCA: Cluster_27 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G02130 | ATRAB1B, RABD2A,... | RAS 5 | 0.04 | OrthoFinder output from all 47 species | |
| AT4G17530 | RAB1C, ATRAB1C, ATRABD2C | RAB GTPase homolog 1C | 0.03 | OrthoFinder output from all 47 species | |
| AT5G47200 | ATRAB1A, ATRABD2B, RAB1A | RAB GTPase homolog 1A | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g021227 | ATRAB1B, RABD2A,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.38G045700.1 | RAB1C, ATRAB1C,... | D-class RAB GTPase & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Cre12.g560150 | ATRAB1A, ATRABD2B, RAB1A | Vesicle trafficking.regulation of membrane tethering and... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_15477 | ATRAB1B, RABD2A,... | D-class RAB GTPase | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g08450.1 | ATRAB1B, RABD2A,... | D-class RAB GTPase | 0.03 | OrthoFinder output from all 47 species | |
| Len_g10682 | ATRAB1A, ATRABD2B, RAB1A | D-class RAB GTPase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g35644 | No alias | D-class RAB GTPase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc05g053940.3.1 | ATRAB1B, RABD2A,... | D-class RAB GTPase | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003924 | GTPase activity | IEA | Interproscan |
| MF | GO:0005525 | GTP binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| MF | GO:0009678 | pyrophosphate hydrolysis-driven proton transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | HCCA |
| MF | GO:0019829 | ATPase-coupled monoatomic cation transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022853 | active monoatomic ion transmembrane transporter activity | IEP | HCCA |
| CC | GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | IEP | HCCA |
| BP | GO:0034220 | monoatomic ion transmembrane transport | IEP | HCCA |
| MF | GO:0042625 | ATPase-coupled ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | HCCA |
| MF | GO:0044769 | ATPase activity, coupled to transmembrane movement of ions, rotational mechanism | IEP | HCCA |
| MF | GO:0046961 | proton-transporting ATPase activity, rotational mechanism | IEP | HCCA |
| BP | GO:0098655 | monoatomic cation transmembrane transport | IEP | HCCA |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | HCCA |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | HCCA |
| BP | GO:1902600 | proton transmembrane transport | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001806 | Small_GTPase | 40 | 148 |
| No external refs found! |
