Azfi_s0028.g023939

Description : component *(eS28) of small ribosomal-subunit (SSU) proteome & original description: CDS=1-339

Gene families : OG0006085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006085_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0028.g023939
Cluster	HCCA: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
AT3G10090	No alias	Nucleic acid-binding, OB-fold-like protein	0.02	OrthoFinder output from all 47 species
Aspi01Gene38530.t1	Aspi01Gene38530	component *(eS28) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.01G107900.1	Ceric.01G107900	component *(eS28) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000194.27	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Cre12.g510450	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.3	OrthoFinder output from all 47 species
Dcu_g44812	RPS28	component *(eS28) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01033420001	RPS28	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	OrthoFinder output from all 47 species
LOC_Os10g27174.1	LOC_Os10g27174	component RPS28 of SSU proteome	0.04	OrthoFinder output from all 47 species
MA_10206328g0010	RPS28	component RPS28 of SSU proteome	0.13	OrthoFinder output from all 47 species
MA_550900g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp3g15160.1	No alias	component RPS28 of SSU proteome	0.14	OrthoFinder output from all 47 species
Pir_g05763	No alias	component *(eS28) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c14_19610V3.1	Pp3c14_19610	Nucleic acid-binding, OB-fold-like protein	0.14	OrthoFinder output from all 47 species
Pp3c1_28770V3.1	Pp3c1_28770	Nucleic acid-binding, OB-fold-like protein	0.1	OrthoFinder output from all 47 species
Pp3c5_6000V3.1	Pp3c5_6000	Nucleic acid-binding, OB-fold-like protein	0.01	OrthoFinder output from all 47 species
Pp3c6_27040V3.1	Pp3c6_27040	Nucleic acid-binding, OB-fold-like protein	0.04	OrthoFinder output from all 47 species
Ppi_g07644	RPS28	component *(eS28) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Smo170205	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	OrthoFinder output from all 47 species
Zm00001e000507_P001	Zm00001e000507	component RPS28 of SSU proteome	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000289	Ribosomal_S28e	51	111

External Links

No external refs found!

Azfi_s0028.g023939

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation