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  5. Azfi_s0040.g026500

Azfi_s0040.g026500 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : not classified & original description: CDS=1-2874


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0040.g026500
Cluster HCCA: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00060p00178160 PUM7, APUM7,... Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT5G56510 APUM12, PUM12 pumilio 12 0.01 OrthoFinder output from all 47 species
Aev_g13809 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g18476 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene23704.t1 APUM12, PUM12,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene54829.t1 PUM7, APUM7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0255.g060478 PUM7, APUM7 not classified & original description: CDS=1-1518 0.03 OrthoFinder output from all 47 species
Ceric.39G043300.1 PUM7, APUM7,... not classified & original description: pacid=50583488... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020878.26 PUM7, APUM7 Pumilio homolog 12 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g01979 APUM12, PUM12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g13713 APUM12, PUM12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g13938 PUM7, APUM7 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_63194g0010 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Msp_g21075 PUM7, APUM7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04974 PUM7, APUM7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05874 PUM7, APUM7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44911 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20896 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63452 PUM7, APUM7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000001 PUM7, APUM7 not classified & original description: CDS=1-2403 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002092 APUM12, PUM12 not classified & original description: CDS=226-2811 0.01 OrthoFinder output from all 47 species
Tin_g03517 APUM12, PUM12 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g04737 PUM7, APUM7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06123 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 650 675
IPR001313 Pumilio_RNA-bd_rpt 720 753
IPR001313 Pumilio_RNA-bd_rpt 792 826
IPR001313 Pumilio_RNA-bd_rpt 758 777
IPR001313 Pumilio_RNA-bd_rpt 831 848
IPR001313 Pumilio_RNA-bd_rpt 685 717
IPR001313 Pumilio_RNA-bd_rpt 609 640
IPR001313 Pumilio_RNA-bd_rpt 573 607
No external refs found!