1. Home
  2. Species
  3. Azolla filiculoides
  4. Sequence
  5. Azfi_s0052.g031519

Azfi_s0052.g031519 (LHCB1.3, CAB140, AB140, CAB1)


Aliases : LHCB1.3, CAB140, AB140, CAB1

Description : component *(LHCb1/2/3) of LHC-II complex & original description: CDS=1-819


Gene families : OG0000137 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000137_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0052.g031519
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00136650 LHCB1.5, LHB1B2,... Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder output from all 47 species
AMTR_s00045p00069220 LHCB1.5, LHB1B2,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AMTR_s00045p00070890 CAB3, AB180,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AMTR_s00076p00074970 LHCB1.3, CAB140,... Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. 0.04 OrthoFinder output from all 47 species
AMTR_s00088p00153020 LHCB2.3, LHCB2,... Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder output from all 47 species
AMTR_s00099p00139960 LHCB5,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AMTR_s00153p00078810 LHCB3*1, LHCB3,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AMTR_s00189p00032350 LHCB1.3, CAB140,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AT1G29910 CAB3, AB180, LHCB1.2 chlorophyll A/B binding protein 3 0.03 OrthoFinder output from all 47 species
Adi_g022370 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02102 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g13119 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Aev_g32760 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Aop_g14415 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aop_g18116 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.06 OrthoFinder output from all 47 species
Aop_g22172 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene10234.t1 LHCB5, Aspi01Gene10234 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28094.t1 LHCB2.2, LHCB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31429.t1 LHCB3*1, LHCB3,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene62745.t1 LHCB1.5, LHB1B2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Azfi_s1940.g108278 LHCB1.3, CAB140,... component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Cba_g04468 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g70411 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Cre01.g066917 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Cre03.g156900 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Cre04.g232104 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Cre12.g548400 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Dac_g23315 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Dac_g29165 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Dcu_g05195 LHCB1.4, LHB1B1 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Dcu_g31947 LHCB1.3, CAB140,... component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Dde_g18848 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Gb_05837 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Gb_23732 LHCB1.5, LHB1B2 component LHCb1/2/3 of LHC-II complex 0.05 OrthoFinder output from all 47 species
Mp7g05530.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Mp7g05890.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Mp7g05980.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Mp7g06710.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.05 OrthoFinder output from all 47 species
Mp7g06750.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Mp7g06790.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Msp_g07998 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ore_g15308 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g21027 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Ore_g32299 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Ore_g35944 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g41462 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Pir_g57933 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Pp3c2_36190V3.1 LHCB2.3, LHCB2,... photosystem II light harvesting complex gene 2.1 0.02 OrthoFinder output from all 47 species
Pp3c2_36500V3.1 LHCB2.3, LHCB2,... photosystem II light harvesting complex gene 2.1 0.03 OrthoFinder output from all 47 species
Pp3c5_7150V3.1 LHCB2.3, LHCB2,... photosystem II light harvesting complex gene 2.1 0.03 OrthoFinder output from all 47 species
Pp3c6_6830V3.1 LHCB2.2, LHCB2,... photosystem II light harvesting complex gene 2.1 0.01 OrthoFinder output from all 47 species
Smo75552 LHCB2.3, LHCB2, LHCB2.4 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Solyc03g005770.3.1 LHCB1.3, CAB140,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Tin_g15266 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Tin_g39699 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 72 238
No external refs found!