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  5. Azfi_s0054.g033749

Azfi_s0054.g033749


Description : not classified & original description: CDS=1-3141


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0054.g033749
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G44785 OSB3 organellar single-stranded DNA binding protein 3 0.03 OrthoFinder output from all 47 species
Adi_g003262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g007990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g020508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g024957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034926 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099289 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42356 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28421 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14256.t1 Aspi01Gene14256 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0045.g029802 No alias not classified & original description: CDS=1-2208 0.04 OrthoFinder output from all 47 species
Azfi_s0221.g058730 No alias not classified & original description: CDS=1-747 0.02 OrthoFinder output from all 47 species
Azfi_s0292.g063377 OTP86 not classified & original description: CDS=1-2337 0.02 OrthoFinder output from all 47 species
Azfi_s2068.g108965 No alias not classified & original description: CDS=97-387 0.02 OrthoFinder output from all 47 species
Cba_g15277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g33742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G032600.1 Ceric.09G032600 not classified & original description: pacid=50587514... 0.02 OrthoFinder output from all 47 species
Ceric.1Z005100.1 Ceric.1Z005100 not classified & original description: pacid=50567700... 0.04 OrthoFinder output from all 47 species
Ceric.21G010300.1 Ceric.21G010300 not classified & original description: pacid=50603707... 0.02 OrthoFinder output from all 47 species
Ceric.31G027200.1 OTP86, Ceric.31G027200 not classified & original description: pacid=50574199... 0.03 OrthoFinder output from all 47 species
Dcu_g06096 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08294 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12504 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g38218 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51019 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13146 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26370 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29669 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01003650001 OTP80 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01029254001 OSB4 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Len_g03311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04593 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_7379g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.02 OrthoFinder output from all 47 species
Msp_g03543 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28092 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31269 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g37758 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g38474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g44509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01804 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08941 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26690 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40943 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45078 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g39051 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06456 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59920 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62885 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g02933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo105197 CRR22 Pentatricopeptide repeat-containing protein At3g49710... 0.03 OrthoFinder output from all 47 species
Smo41818 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Solyc03g119950.1.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.03 OrthoFinder output from all 47 species
Solyc04g064750.2.1 Solyc04g064750 RNA editing factor (MEF12). serine carboxypeptidase 0.03 OrthoFinder output from all 47 species
Spa_g46731 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55537 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005246_P001 Zm00001e005246 Pentatricopeptide repeat-containing protein At2g41080... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 606 631
IPR002885 Pentatricopeptide_repeat 202 222
IPR002885 Pentatricopeptide_repeat 405 426
IPR002885 Pentatricopeptide_repeat 634 664
IPR002885 Pentatricopeptide_repeat 327 375
IPR002885 Pentatricopeptide_repeat 227 275
IPR002885 Pentatricopeptide_repeat 126 173
IPR002885 Pentatricopeptide_repeat 666 714
IPR002885 Pentatricopeptide_repeat 769 816
IPR002885 Pentatricopeptide_repeat 430 478
IPR002885 Pentatricopeptide_repeat 530 571
IPR032867 DYW_dom 973 1046
No external refs found!