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  5. Azfi_s0055.g034007

Azfi_s0055.g034007


Description : CMF transcription factor & original description: CDS=693-2417


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0055.g034007

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 CIA2,... RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT4G25990 CIL CCT motif family protein 0.02 OrthoFinder output from all 47 species
Aev_g21583 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g34755 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04399 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13738 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15231.t1 Aspi01Gene15231 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene16706.t1 Aspi01Gene16706 CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0172.g055744 No alias not classified & original description: CDS=1-1599 0.03 OrthoFinder output from all 47 species
Cre15.g635100 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g04816 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g20875 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g20961 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g23913 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g09039 No alias BBX class-III transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024661001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
LOC_Os03g50310.1 LOC_Os03g50310 transcription factor (BBX-CO) 0.05 OrthoFinder output from all 47 species
Len_g23704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_470965g0010 No alias transcription factor (BBX-CO) 0.05 OrthoFinder output from all 47 species
MA_91504g0010 No alias transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
MA_96860g0010 CIA2 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
Mp2g16350.1 No alias transcription factor (BBX-CO) 0.01 OrthoFinder output from all 47 species
Ore_g09212 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16447 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43291 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g13174 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60427 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007602 No alias not classified & original description: CDS=193-1710 0.04 OrthoFinder output from all 47 species
Smo438000 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
Spa_g04603 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005433_P002 Zm00001e005433 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 525 567
IPR000315 Znf_B-box 16 60
No external refs found!