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  5. Azfi_s0066.g036066

Azfi_s0066.g036066 (UPF1, ATUPF1, LBA1)


Aliases : UPF1, ATUPF1, LBA1

Description : not classified & original description: CDS=178-2511


Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0066.g036066

Target Alias Description ECC score Gene Family Method Actions
Aev_g08220 UPF1, ATUPF1, LBA1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g51663 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Lfl_g04285 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Sam_g10496 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08453 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Tin_g07774 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Zm00001e010427_P002 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 615 738
IPR041677 DNA2/NAM7_AAA_11 391 607
No external refs found!