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  5. Azfi_s0093.g043261

Azfi_s0093.g043261 (LSH4)


Aliases : LSH4

Description : plant-specific ALOG-type transcription factor & original description: CDS=1-1575


Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0093.g043261
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00052610 LSH6,... Protein G1-like2 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
AMTR_s00153p00047660 evm_27.TU.AmTr_v1... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.03 OrthoFinder output from all 47 species
AMTR_s00155p00022580 LSH6,... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 OrthoFinder output from all 47 species
AT2G42610 LSH10 Protein of unknown function (DUF640) 0.04 OrthoFinder output from all 47 species
AT3G23290 LSH4 No description available 0.04 OrthoFinder output from all 47 species
AT4G18610 LSH9 Protein of unknown function (DUF640) 0.03 OrthoFinder output from all 47 species
Adi_g018931 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dcu_g16892 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dde_g22007 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01020708001 LSH10 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.04 OrthoFinder output from all 47 species
GSVIVT01021754001 LSH4 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 OrthoFinder output from all 47 species
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.04 OrthoFinder output from all 47 species
GSVIVT01028348001 LSH3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 OrthoFinder output from all 47 species
LOC_Os01g61310.1 LSH6, LOC_Os01g61310 Protein G1-like7 OS=Oryza sativa subsp. indica... 0.01 OrthoFinder output from all 47 species
LOC_Os05g39500.1 LSH6, LOC_Os05g39500 Protein G1-like8 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os07g04670.1 LSH6, LOC_Os07g04670 Protein G1 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Len_g03807 LSH1 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Nbi_g02008 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pnu_g12268 LSH6 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ppi_g53162 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0149.g023275 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc02g069510.1.1 LSH4, Solyc02g069510 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.01 OrthoFinder output from all 47 species
Solyc05g055020.4.1 LSH1, Solyc05g055020 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1... 0.04 OrthoFinder output from all 47 species
Solyc10g007310.1.1 LSH10, Solyc10g007310 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.04 OrthoFinder output from all 47 species
Solyc10g008000.1.1 LSH10, Solyc10g008000 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.02 OrthoFinder output from all 47 species
Zm00001e004570_P001 LSH4, Zm00001e004570 Protein G1-like4 OS=Oryza sativa subsp. indica... 0.05 OrthoFinder output from all 47 species
Zm00001e012687_P001 LSH4, Zm00001e012687 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.04 OrthoFinder output from all 47 species
Zm00001e016177_P002 LSH4, Zm00001e016177 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
Zm00001e019403_P001 LSH6, Zm00001e019403 Protein G1-like7 OS=Oryza sativa subsp. indica... 0.05 OrthoFinder output from all 47 species
Zm00001e023639_P001 LSH4, Zm00001e023639 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
Zm00001e027222_P001 LSH6, Zm00001e027222 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.03 OrthoFinder output from all 47 species
Zm00001e031512_P001 LSH6, Zm00001e031512 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.02 OrthoFinder output from all 47 species
Zm00001e032784_P001 LSH6, Zm00001e032784 Protein G1 OS=Oryza sativa subsp. japonica... 0.07 OrthoFinder output from all 47 species
Zm00001e037775_P001 LSH4, Zm00001e037775 Protein G1-like2 OS=Oryza sativa subsp. indica... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0030247 polysaccharide binding IEP HCCA
InterPro domains Description Start Stop
IPR006936 ALOG_dom 74 195
No external refs found!