Description : component *(Sm-D1) of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex & original description: CDS=1-393
Gene families : OG0003223 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003223_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Azfi_s0093.g043309 | |
| Cluster | HCCA: Cluster_19 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g077290 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g17572 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g06290 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene16108.t1 | Aspi01Gene16108 | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.39G023500.1 | Ceric.39G023500 | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000754.23 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| Cre16.g665400 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01014776001 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c5_16280V3.1 | Pp3c5_16280 | Small nuclear ribonucleoprotein family protein | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g42470 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 30 | 68 |
| No external refs found! |
