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  5. Azfi_s0095.g043572

Azfi_s0095.g043572


Description : not classified & original description: CDS=1-2958


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0095.g043572

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.03 OrthoFinder output from all 47 species
AMTR_s00046p00214930 CRR22,... Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00056p00185560 VAC1, ECB2, ATECB2 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00061p00127300 MEF22,... Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
AMTR_s00062p00213230 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
AMTR_s00084p00089150 OTP86,... Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.03 OrthoFinder output from all 47 species
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g059237 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g069206 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g089039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07955 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08796 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20191 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34713.t1 Aspi01Gene34713 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g66427 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G049700.1 Ceric.02G049700 not classified & original description: pacid=50584245... 0.04 OrthoFinder output from all 47 species
Ceric.04G031200.1 Ceric.04G031200 not classified & original description: pacid=50630737... 0.04 OrthoFinder output from all 47 species
Ceric.05G065200.1 Ceric.05G065200 not classified & original description: pacid=50577782... 0.03 OrthoFinder output from all 47 species
Ceric.09G010600.1 CRR22, Ceric.09G010600 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01015233001 EMB2261 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Gb_15183 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.03 OrthoFinder output from all 47 species
LOC_Os01g41650.1 LOC_Os01g41650 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
LOC_Os08g05750.1 LOC_Os08g05750 Pentatricopeptide repeat-containing protein At4g16835,... 0.03 OrthoFinder output from all 47 species
LOC_Os12g15460.1 LOC_Os12g15460 Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
Len_g03808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07668 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_100519g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
MA_179801g0020 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Msp_g08181 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g13253 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g43705 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06768 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10444 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13667 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06871 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20007 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01995 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13334 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g61472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15400 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002155 CRR22 not classified & original description: CDS=84-2588 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016993 No alias not classified & original description: CDS=162-2816 0.04 OrthoFinder output from all 47 species
Sam_g14278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35469 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g076700.1.1 Solyc02g076700 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Solyc04g051480.1.1 OTP84, Solyc04g051480 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Solyc06g053850.4.1 Solyc06g053850 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc09g009790.4.1 Solyc09g009790 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g18381 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23503 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23620 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g28119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51341 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g57006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10853 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23011 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e039394_P003 Zm00001e039394 Pentatricopeptide repeat-containing protein At5g04780,... 0.02 OrthoFinder output from all 47 species
Zm00001e041694_P001 Zm00001e041694 Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 166 190
IPR002885 Pentatricopeptide_repeat 370 392
IPR002885 Pentatricopeptide_repeat 676 700
IPR002885 Pentatricopeptide_repeat 64 89
IPR046848 E_motif 925 971
IPR002885 Pentatricopeptide_repeat 806 852
IPR002885 Pentatricopeptide_repeat 90 135
IPR002885 Pentatricopeptide_repeat 191 238
IPR002885 Pentatricopeptide_repeat 294 340
IPR002885 Pentatricopeptide_repeat 599 646
IPR002885 Pentatricopeptide_repeat 497 544
IPR002885 Pentatricopeptide_repeat 396 441
IPR002885 Pentatricopeptide_repeat 702 748
No external refs found!