Azfi_s0099.g044118 (PGP20)

Aliases : PGP20

Description : subfamily ABCB transporter & original description: CDS=2010-6257

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0099.g044118

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00076p00195870	PGP1, ABCB1,...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Ala_g03780	PGP20	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g11046	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Als_g07511	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g02407	PGP20	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g36046	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene10110.t1	ABCB19,...	ABC-B-type transporter *(AMN3) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene20594.t1	PGP20, Aspi01Gene20594	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene20595.t1	PGP20, Aspi01Gene20595	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene32170.t1	ABCB14,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0002.g001271	ABCB19,...	subfamily ABCB transporter & original description: CDS=82-3879	0.06	OrthoFinder output from all 47 species
Dac_g43354	ABCB19,...	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Dde_g00972	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g47998	ABCB19,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g12010	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01028256001	PGP11	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
GSVIVT01033645001	PGP1, ABCB1, ATPGP1	Solute transport.primary active transport.ABC...	0.04	OrthoFinder output from all 47 species
LOC_Os01g74470.1	PGP20, LOC_Os01g74470	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
LOC_Os08g05690.1	ABCB19,...	subfamily ABCB transporter	0.06	OrthoFinder output from all 47 species
Lfl_g10739	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
MA_1824g0020	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Smo419451	No alias	Solute transport.primary active transport.ABC...	0.05	OrthoFinder output from all 47 species
Zm00001e018488_P001	PGP20, Zm00001e018488	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1185	1332
IPR003439	ABC_transporter-like_ATP-bd	424	566
IPR011527	ABC1_TM_dom	80	351
IPR011527	ABC1_TM_dom	848	1112

External Links

No external refs found!

Azfi_s0099.g044118 (PGP20)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation