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  5. Azfi_s0109.g045300

Azfi_s0109.g045300


Description : histone H3 variant *(CENH3) & original description: CDS=340-828


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0109.g045300

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00044250 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
AT5G65360 No alias Histone superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g12785 No alias histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22999 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00133 No alias histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g19848 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33085 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01931.t1 Aspi01Gene01931 histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42452.t1 Aspi01Gene42452 histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G051000.1 Ceric.14G051000 histone *(H3) & original description: pacid=50634481... 0.03 OrthoFinder output from all 47 species
Dac_g04344 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18977 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g31882 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_27618 No alias histone (H3) 0.06 OrthoFinder output from all 47 species
Gb_29026 No alias histone (H3) 0.04 OrthoFinder output from all 47 species
MA_197719g0010 No alias histone (H3) 0.04 OrthoFinder output from all 47 species
MA_90399g0010 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
Mp7g18030.1 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Msp_g41988 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g10157 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Smo269004 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
Solyc01g079110.4.1 Solyc01g079110 histone (H3) 0.03 OrthoFinder output from all 47 species
Solyc01g086820.4.1 Solyc01g086820 histone (H3) 0.03 OrthoFinder output from all 47 species
Solyc02g077480.1.1 Solyc02g077480 histone (H3) 0.03 OrthoFinder output from all 47 species
Spa_g33705 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g03087 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018263_P001 Zm00001e018263 histone (H3) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005694 chromosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 34 154
No external refs found!