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  5. Azfi_s0115.g046267

Azfi_s0115.g046267 (NRPC2)


Aliases : NRPC2

Description : component *(NRPC2) of RNA polymerase III complex & original description: CDS=110-3751


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0115.g046267

Target Alias Description ECC score Gene Family Method Actions
Dcu_g02001 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Mp6g06170.1 NRPC2 subunit 2 of Pol III RNA polymerase 0.02 OrthoFinder output from all 47 species
Msp_g14438 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR007647 RNA_pol_Rpb2_5 643 672
IPR007120 DNA-dir_RNAP_su2_dom 690 1111
IPR007645 RNA_pol_Rpb2_3 460 524
IPR007642 RNA_pol_Rpb2_2 206 384
IPR007646 RNA_pol_Rpb2_4 561 621
IPR007644 RNA_pol_bsu_protrusion 51 430
IPR007641 RNA_pol_Rpb2_7 1113 1203
No external refs found!