Azfi_s0129.g048848 (ARF6)

Aliases : ARF6

Description : ARF-type transcription factor & original description: CDS=56-2815

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0129.g048848

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00198750	ARF19, IAA22,...	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.03	OrthoFinder output from all 47 species
Adi_g001040	ARF11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g014256	ARF16	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g014286	ARF4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g057044	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g070345	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Adi_g088063	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g089250	ARF6	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g12905	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g22304	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene05878.t1	ARF8, ATARF8,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene11714.t1	ARF6, Aspi01Gene11714	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene53089.t1	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0065.g035933	ARF6	not classified & original description: CDS=1-678	0.01	OrthoFinder output from all 47 species
Dcu_g17078	ARF16	ARF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ehy_g09257	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g22354	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Gb_23186	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Gb_23328	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os04g36054.1	ARF1, LOC_Os04g36054	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os04g43910.1	ARF10, LOC_Os04g43910	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os05g43920.1	ARF3, ETT, LOC_Os05g43920	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os06g46410.1	ARF6, LOC_Os06g46410	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os10g33940.1	ARF16, LOC_Os10g33940	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os11g32110.1	HSS, ARF1-BP,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Ore_g10460	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g19396	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo438333	TIR5, MSG1,...	Auxin response factor 11 OS=Oryza sativa subsp. indica	0.02	OrthoFinder output from all 47 species
Spa_g29254	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e012670_P001	ARF16, Zm00001e012670	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e030325_P003	ARF6, Zm00001e030325	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e041910_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	282	364

External Links

No external refs found!

Azfi_s0129.g048848 (ARF6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation