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  5. Azfi_s0147.g052994

Azfi_s0147.g052994 (ATL6)


Aliases : ATL6

Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: CDS=1-735


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0147.g052994
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00271850 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00008p00185200 ATL6,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00223430 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G23980 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G17450 RHA3A RING-H2 finger A3A 0.02 OrthoFinder output from all 47 species
AT2G35910 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G43430 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G58580 ATL63, TL63 TOXICOS EN LEVADURA 63 0.02 OrthoFinder output from all 47 species
Aev_g02496 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g03039 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aob_g29275 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aop_g16315 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene27966.t1 Aspi01Gene27966 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07523 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g23056 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
GSVIVT01034700001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01038717001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Gb_05005 BRH1 E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os01g53500.1 LOC_Os01g53500 RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os01g55110.1 LOC_Os01g55110 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os02g45390.1 LOC_Os02g45390 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os02g46100.1 LOC_Os02g46100 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os04g16970.1 LOC_Os04g16970 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os04g49550.1 RHA3A, LOC_Os04g49550 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os06g12680.1 LOC_Os06g12680 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os08g44950.1 LOC_Os08g44950 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Len_g14676 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_114175g0010 ATL2, TL2 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
MA_904294g0010 ATL3 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Msp_g10125 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Nbi_g14103 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g16147 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g11149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g21769 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g21782 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g12572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g24030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005176 ATL5 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Solyc01g088450.2.1 Solyc01g088450 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc01g096650.3.1 Solyc01g096650 Putative RING-H2 finger protein ATL69 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc01g100100.4.1 Solyc01g100100 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g17343 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g24917 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Zm00001e000398_P001 Zm00001e000398 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e010029_P001 XERICO, Zm00001e010029 ubiquitin protein ligase (XERICO) 0.02 OrthoFinder output from all 47 species
Zm00001e015259_P001 Zm00001e015259 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e020958_P001 Zm00001e020958 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e032186_P001 RHA3B, Zm00001e032186 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e034421_P001 ATL6, Zm00001e034421 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e035560_P001 ATL3, Zm00001e035560 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 144 186
No external refs found!