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  5. Azfi_s0149.g053204

Azfi_s0149.g053204


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase & original description: CDS=1-1320


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0149.g053204

Target Alias Description ECC score Gene Family Method Actions
AT1G26800 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G26400 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G01980 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
Als_g05465 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g13383 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g44017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.35G016600.1 Ceric.35G016600 not classified & original description: pacid=50582007... 0.03 OrthoFinder output from all 47 species
Ehy_g14500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015309001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
GSVIVT01037379001 RHC1A Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os03g22830.2 RHC1A, LOC_Os03g22830 Probable E3 ubiquitin-protein ligase RHC1A... 0.03 OrthoFinder output from all 47 species
LOC_Os09g06770.1 LOC_Os09g06770 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g06629 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g25714 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Mp8g17140.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g20916 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012146 No alias not classified & original description: CDS=1-969 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012286 No alias not classified & original description: CDS=1-1674 0.03 OrthoFinder output from all 47 species
Sam_g14669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25212 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Tin_g12871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011788_P002 Zm00001e011788 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0005375 copper ion transmembrane transporter activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0035434 copper ion transmembrane transport IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR039525 RNF126-like_zinc-ribbon 27 56
IPR001841 Znf_RING 276 318
No external refs found!