Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1
Description : not classified & original description: CDS=655-2703
Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Azfi_s0154.g053526 | |
| Cluster | HCCA: Cluster_19 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00026p00051870 | DCL4, ATDCL4,... | RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00033p00127000 | ATDCL3, DCL3,... | RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g37944 | DCL4, ATDCL4 | endoribonuclease (DCL4) of transacting siRNA pathway &... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g21964 | DCL1, CAF,... | endoribonuclease *(DCL3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g06264 | DCL1, CAF,... | endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene59762.t1 | DCL1, CAF,... | endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.01G108700.1 | DCL4, ATDCL4,... | endoribonuclease (DCL4) of transacting siRNA pathway &... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g16743 | ATDCL2, DCL2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g11612 | No alias | endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... | 0.03 | OrthoFinder output from all 47 species | |
| Smo448444 | DCL1, CAF,... | RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e018890_P004 | ATDCL3, DCL3,... | endoribonuclease (DCL3) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004525 | ribonuclease III activity | IEA | Interproscan |
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| BP | GO:0006396 | RNA processing | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
| MF | GO:0003917 | DNA topoisomerase type I (single strand cut, ATP-independent) activity | IEP | HCCA |
| BP | GO:0006265 | DNA topological change | IEP | HCCA |
| BP | GO:0006298 | mismatch repair | IEP | HCCA |
| BP | GO:0006488 | dolichol-linked oligosaccharide biosynthetic process | IEP | HCCA |
| BP | GO:0006490 | oligosaccharide-lipid intermediate biosynthetic process | IEP | HCCA |
| MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
| BP | GO:0071103 | DNA conformation change | IEP | HCCA |
| MF | GO:0106073 | dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity | IEP | HCCA |
| No external refs found! |
