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  5. Azfi_s0232.g059292

Azfi_s0232.g059292


Description : not classified & original description: CDS=1-1740


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0232.g059292
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.04 OrthoFinder output from all 47 species
Aev_g40807 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g07176 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g13473 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g16632 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g16781 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g31151 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g35756 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g18769 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19261 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26423 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g33141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0069.g036648 No alias not classified & original description: CDS=1-1899 0.08 OrthoFinder output from all 47 species
Azfi_s0160.g054062 OTP86 not classified & original description: CDS=1-2322 0.08 OrthoFinder output from all 47 species
Dcu_g37501 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g49128 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g36368 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Gb_27891 OTP86 RNA editing factor (OTP86) 0.03 OrthoFinder output from all 47 species
Len_g02909 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_56660g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Nbi_g21053 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g41721 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g57463 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009200 OTP82 not classified & original description: CDS=343-1080 0.1 OrthoFinder output from all 47 species
Sam_g13068 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g29238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo110549 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Solyc03g051780.3.1 Solyc03g051780 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Solyc03g116840.3.1 Solyc03g116840 RNA editing factor (OTP81) 0.06 OrthoFinder output from all 47 species
Solyc07g005170.3.1 Solyc07g005170 Pentatricopeptide repeat-containing protein At1g09410,... 0.05 OrthoFinder output from all 47 species
Tin_g05124 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05979 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 5 31
IPR002885 Pentatricopeptide_repeat 88 110
IPR002885 Pentatricopeptide_repeat 497 519
IPR002885 Pentatricopeptide_repeat 293 318
IPR002885 Pentatricopeptide_repeat 395 419
IPR002885 Pentatricopeptide_repeat 319 362
IPR002885 Pentatricopeptide_repeat 114 161
IPR002885 Pentatricopeptide_repeat 421 468
IPR002885 Pentatricopeptide_repeat 216 263
No external refs found!