1. Home
  2. Species
  3. Azolla filiculoides
  4. Sequence
  5. Azfi_s0236.g059498

Azfi_s0236.g059498


Description : not classified & original description: CDS=1-2331


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0236.g059498
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00232800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.04 OrthoFinder output from all 47 species
AT2G37320 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g07974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10633 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21568 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g23881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42233 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05074 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07409 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g08304 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g09077 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g14055 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28220 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g29475 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g36480 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70336 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene09935.t1 CRR21, Aspi01Gene09935 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G011900.1 EMB2758, Ceric.16G011900 not classified & original description: pacid=50589297... 0.05 OrthoFinder output from all 47 species
Ceric.18G024700.1 Ceric.18G024700 not classified & original description: pacid=50621916... 0.04 OrthoFinder output from all 47 species
Dac_g20308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50575 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g50757 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g20812 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g58630.1 LOC_Os01g58630 Pentatricopeptide repeat-containing protein At5g15300... 0.03 OrthoFinder output from all 47 species
LOC_Os05g24890.1 LOC_Os05g24890 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
LOC_Os08g28830.1 LOC_Os08g28830 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Len_g30337 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_106123g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_110266g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_117676g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_127785g0010 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.05 OrthoFinder output from all 47 species
MA_175688g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_183278g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.05 OrthoFinder output from all 47 species
MA_39595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_408185g0010 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.02 OrthoFinder output from all 47 species
MA_412g0010 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
MA_445076g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
MA_59599g0010 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.08 OrthoFinder output from all 47 species
MA_7907g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.07 OrthoFinder output from all 47 species
Mp8g01790.1 No alias ssDNA-binding protein (OSB) 0.04 OrthoFinder output from all 47 species
Msp_g02080 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17002 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g40822 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g01992 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g34702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02558 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03722 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g06094 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g17077 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17865 REME1 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pnu_g22838 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25064 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30634 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44704 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g53366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61853 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006451 No alias not classified & original description: CDS=1-639 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0232.g026457 No alias not classified & original description: CDS=1-363 0.04 OrthoFinder output from all 47 species
Sam_g04342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g21944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g33092 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g02585 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g14323 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g23985 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g32588 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55588 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g26720 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 479 526
IPR002885 Pentatricopeptide_repeat 580 627
IPR002885 Pentatricopeptide_repeat 71 117
IPR002885 Pentatricopeptide_repeat 377 424
IPR002885 Pentatricopeptide_repeat 172 219
IPR002885 Pentatricopeptide_repeat 274 321
IPR002885 Pentatricopeptide_repeat 351 373
IPR046848 E_motif 699 744
No external refs found!