Azfi_s0237.g059557

Description : RNA helicase Prp43 of Intron-Lariat Spliceosome complex & original description: CDS=264-2405

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0237.g059557
Cluster	HCCA: Cluster_89

Target	Alias	Description	ECC score	Gene Family Method
AT2G35340	MEE29	helicase domain-containing protein	0.03	OrthoFinder output from all 47 species
Adi_g107993	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g19131	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g24091	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g33796	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021589.29	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.01	OrthoFinder output from all 47 species
Dde_g48013	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01010362001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Len_g57131	EMB3011	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g10425	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.05	OrthoFinder output from all 47 species
Msp_g13247	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g15013	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g17507	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3s62_10V3.1	Pp3s62_10	RNA helicase family protein	0.02	OrthoFinder output from all 47 species
Sam_g03727	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g25079	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Sam_g48742	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Solyc01g079250.3.1	Solyc01g079250	helicase Prp43 of Intron-Lariat Spliceosome complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003839	gamma-glutamylcyclotransferase activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006749	glutathione metabolic process	IEP	HCCA
BP	GO:0006751	glutathione catabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016842	amidine-lyase activity	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	HCCA
BP	GO:0043171	peptide catabolic process	IEP	HCCA
BP	GO:0044273	sulfur compound catabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007502	Helicase-assoc_dom	454	542
IPR011545	DEAD/DEAH_box_helicase_dom	61	213
IPR011709	DEAD-box_helicase_OB_fold	604	679
IPR001650	Helicase_C	260	391

External Links

No external refs found!

Azfi_s0237.g059557

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation