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  5. Azfi_s0256.g060525

Azfi_s0256.g060525


Description : E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-2343


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0256.g060525

Target Alias Description ECC score Gene Family Method Actions
AT2G42030 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G44410 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
LOC_Os05g39380.1 LOC_Os05g39380 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Smo402081 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Solyc02g065540.3.1 Solyc02g065540 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e005157_P001 Zm00001e005157 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e027279_P001 Zm00001e027279 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e031880_P001 Zm00001e031880 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 492 532
No external refs found!