Description : component *(uS15) of small ribosomal-subunit (SSU) proteome & original description: CDS=253-399
Gene families : OG0001931 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001931_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Azfi_s0288.g063234 | |
| Cluster | HCCA: Cluster_54 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00069p00029190 | ATRPS13A, RPS13,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.1 | OrthoFinder output from all 47 species | |
| AMTR_s00109p00088200 | ATRPS13A, RPS13,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.05 | OrthoFinder output from all 47 species | |
| AT3G60770 | No alias | Ribosomal protein S13/S15 | 0.19 | OrthoFinder output from all 47 species | |
| AT4G00100 | ATRPS13A, RPS13,... | ribosomal protein S13A | 0.18 | OrthoFinder output from all 47 species | |
| Adi_g074584 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g074585 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
| Ala_g06976 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
| Als_g05939 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g18408 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g38582 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g39820 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g01920 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.11 | OrthoFinder output from all 47 species | |
| Aop_g41112 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.12 | OrthoFinder output from all 47 species | |
| Aspi01Gene08890.t2 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene58740.t1 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g07246 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g08418 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.14G028200.1 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.14 | OrthoFinder output from all 47 species | |
| Ceric.24G030900.1 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.08 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000489.15 | ATRPS13A, RPS13,... | 40S ribosomal protein S13 OS=Glycine max | 0.07 | OrthoFinder output from all 47 species | |
| Cre07.g331900 | ATRPS13A, RPS13,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.26 | OrthoFinder output from all 47 species | |
| Dac_g03966 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.1 | OrthoFinder output from all 47 species | |
| Dac_g04888 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g10636 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g19754 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g45242 | No alias | component *(uS15) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g23160 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01018537001 | ATRPS13A, RPS13,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.11 | OrthoFinder output from all 47 species | |
| GSVIVT01027637001 | ATRPS13A, RPS13,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.21 | OrthoFinder output from all 47 species | |
| Gb_16397 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
| Gb_18181 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.17 | OrthoFinder output from all 47 species | |
| Gb_34582 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.14 | OrthoFinder output from all 47 species | |
| LOC_Os07g38540.1 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os08g02400.1 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.17 | OrthoFinder output from all 47 species | |
| LOC_Os08g02410.1 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.21 | OrthoFinder output from all 47 species | |
| Len_g05038 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
| Len_g54875 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g14184 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g22208 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| MA_141232g0010 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.14 | OrthoFinder output from all 47 species | |
| Mp4g03410.1 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.21 | OrthoFinder output from all 47 species | |
| Msp_g28279 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g34165 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g15982 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g04609 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g33497 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g11979 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Pp3c16_15220V3.1 | ATRPS13A, RPS13,... | ribosomal protein S13A | 0.1 | OrthoFinder output from all 47 species | |
| Pp3c7_26720V3.1 | ATRPS13A, RPS13,... | ribosomal protein S13A | 0.13 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0072.g016899 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
| Sam_g13246 | No alias | component *(uS15) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g18450 | No alias | component *(uS15) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
| Sam_g20369 | No alias | component *(uS15) of small ribosomal-subunit (SSU)... | 0.08 | OrthoFinder output from all 47 species | |
| Sam_g37409 | No alias | component *(uS15) of small ribosomal-subunit (SSU)... | 0.11 | OrthoFinder output from all 47 species | |
| Smo440805 | ATRPS13A, RPS13,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.11 | OrthoFinder output from all 47 species | |
| Solyc01g091220.3.1 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.2 | OrthoFinder output from all 47 species | |
| Solyc03g083530.3.1 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.09 | OrthoFinder output from all 47 species | |
| Solyc05g051000.3.1 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.12 | OrthoFinder output from all 47 species | |
| Solyc10g018250.2.1 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.13 | OrthoFinder output from all 47 species | |
| Solyc11g072260.2.1 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.18 | OrthoFinder output from all 47 species | |
| Spa_g01293 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g03180 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.2 | OrthoFinder output from all 47 species | |
| Spa_g56598 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.19 | OrthoFinder output from all 47 species | |
| Tin_g22858 | ATRPS13A, RPS13,... | component *(uS15) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e021837_P003 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.23 | OrthoFinder output from all 47 species | |
| Zm00001e021839_P001 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.25 | OrthoFinder output from all 47 species | |
| Zm00001e029210_P002 | ATRPS13A, RPS13,... | component RPS13 of SSU proteome | 0.18 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0003924 | GTPase activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |
