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  5. Azfi_s0400.g068228

Azfi_s0400.g068228


Description : not classified & original description: CDS=1-1902


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0400.g068228
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Adi_g022087 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g089158 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07273 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g40807 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g06307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26657 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g30789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28217 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09162 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23786 MEF19 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49892.t2 Aspi01Gene49892 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05763 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g11358 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20476 MEF22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g31516 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34432 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75325 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G034400.1 Ceric.04G034400 not classified & original description: pacid=50632280... 0.03 OrthoFinder output from all 47 species
Ceric.22G009800.1 Ceric.22G009800 not classified & original description: pacid=50615356... 0.02 OrthoFinder output from all 47 species
Ceric.23G030200.1 Ceric.23G030200 not classified & original description: pacid=50609682... 0.02 OrthoFinder output from all 47 species
Ceric.28G018400.1 Ceric.28G018400 not classified & original description: pacid=50571000... 0.03 OrthoFinder output from all 47 species
Dac_g04499 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06719 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g41493 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g26930 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01024606001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.01 OrthoFinder output from all 47 species
Gb_32256 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.02 OrthoFinder output from all 47 species
Len_g12777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07823 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32657 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_118961g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.01 OrthoFinder output from all 47 species
MA_7907g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.01 OrthoFinder output from all 47 species
MA_8499g0030 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 47 species
Msp_g46446 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g17003 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12690 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03469 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17865 REME1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g32088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008324 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.04 OrthoFinder output from all 47 species
Sam_g13864 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50108 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo91775 No alias Pentatricopeptide repeat-containing protein At4g25270,... 0.01 OrthoFinder output from all 47 species
Spa_g09360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g10134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g28935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05186 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g25388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26720 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g38826 REME1 not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
CC GO:0005956 protein kinase CK2 complex IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
CC GO:0070449 elongin complex IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 104 151
IPR002885 Pentatricopeptide_repeat 205 253
IPR002885 Pentatricopeptide_repeat 48 74
IPR002885 Pentatricopeptide_repeat 262 292
IPR002885 Pentatricopeptide_repeat 501 528
IPR002885 Pentatricopeptide_repeat 464 488
IPR002885 Pentatricopeptide_repeat 436 457
IPR002885 Pentatricopeptide_repeat 363 389
No external refs found!