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  5. Azfi_s0410.g068507

Azfi_s0410.g068507


Description : not classified & original description: CDS=1-2022


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0410.g068507

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00067180 EMB2261,... Pentatricopeptide repeat-containing protein At2g46050,... 0.02 OrthoFinder output from all 47 species
Adi_g020425 CRR2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g07176 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g10028 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g23626 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34036.t1 CRR22, Aspi01Gene34036 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000903 EMB2261 not classified & original description: CDS=1-2043 0.06 OrthoFinder output from all 47 species
Azfi_s0002.g001067 EMB2758 not classified & original description: CDS=1-1968 0.07 OrthoFinder output from all 47 species
Azfi_s0059.g034591 No alias not classified & original description: CDS=1-1749 0.06 OrthoFinder output from all 47 species
Azfi_s0119.g046740 No alias not classified & original description: CDS=1-2259 0.06 OrthoFinder output from all 47 species
Azfi_s0154.g053544 No alias ssDNA-binding protein *(OSB) & original description: CDS=137-355 0.09 OrthoFinder output from all 47 species
Cba_g19790 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g19875 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20700 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g22830 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g29910 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g46020 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g67652 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.07G068400.1 Ceric.07G068400 not classified & original description: pacid=50628071... 0.05 OrthoFinder output from all 47 species
Ceric.22G034400.1 Ceric.22G034400 not classified & original description: pacid=50613809... 0.04 OrthoFinder output from all 47 species
Ceric.23G013400.1 Ceric.23G013400 not classified & original description: pacid=50609831... 0.05 OrthoFinder output from all 47 species
Ceric.34G057700.1 CRR2, Ceric.34G057700 not classified & original description: pacid=50623387... 0.05 OrthoFinder output from all 47 species
Ceric.36G051900.1 Ceric.36G051900 not classified & original description: pacid=50568048... 0.05 OrthoFinder output from all 47 species
Dac_g16781 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21802 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22610 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23845 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01029252001 PTAC9, OSB2 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Lfl_g23050 OTP85 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g04427 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g04440 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g09805 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g41122 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g24850 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g01222 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g08832 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g31968 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g57858 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009200 OTP82 not classified & original description: CDS=343-1080 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 419 446
IPR002885 Pentatricopeptide_repeat 287 310
IPR002885 Pentatricopeptide_repeat 518 548
IPR002885 Pentatricopeptide_repeat 390 410
IPR002885 Pentatricopeptide_repeat 209 257
IPR002885 Pentatricopeptide_repeat 102 154
IPR002885 Pentatricopeptide_repeat 312 361
No external refs found!