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  5. Azfi_s0506.g073971

Azfi_s0506.g073971


Description : not classified & original description: CDS=1-2430


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0506.g073971
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00122p00115170 CRR21 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Adi_g005694 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26377 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06648 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28526 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g37237 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67802 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z131300.1 CRR22, Ceric.1Z131300 not classified & original description: pacid=50639026... 0.04 OrthoFinder output from all 47 species
Ceric.27G006800.1 OTP86, Ceric.27G006800 not classified & original description: pacid=50605373... 0.03 OrthoFinder output from all 47 species
Ceric.33G060200.1 Ceric.33G060200 not classified & original description: pacid=50607485... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g08709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19078 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g49796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g51736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47958 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os08g39130.1 LOC_Os08g39130 Pentatricopeptide repeat-containing protein At2g29760,... 0.02 OrthoFinder output from all 47 species
LOC_Os11g29230.1 CRR22, LOC_Os11g29230 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Len_g03902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05436 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g21362 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g43456 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_9384g0020 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.02 OrthoFinder output from all 47 species
Nbi_g06230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09573 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12907 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03061 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20232 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010549 No alias not classified & original description: CDS=364-2607 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0156.g023639 No alias not classified & original description: CDS=1-2241 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000077 DNA damage checkpoint signaling IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
BP GO:0006541 glutamine metabolic process IEP HCCA
BP GO:0006542 glutamine biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0030896 checkpoint clamp complex IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0031570 DNA integrity checkpoint signaling IEP HCCA
BP GO:0042770 signal transduction in response to DNA damage IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 455 482
IPR002885 Pentatricopeptide_repeat 483 511
IPR002885 Pentatricopeptide_repeat 278 325
IPR002885 Pentatricopeptide_repeat 178 225
IPR002885 Pentatricopeptide_repeat 76 123
IPR002885 Pentatricopeptide_repeat 583 629
IPR002885 Pentatricopeptide_repeat 380 423
No external refs found!