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  5. Azfi_s1954.g108349

Azfi_s1954.g108349 (TRX P, TRX z)


Aliases : TRX P, TRX z

Description : cofactor of plastid-encoded RNA polymerase *(PAP10/TrxZ) & original description: CDS=78-608


Gene families : OG0002657 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002657_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s1954.g108349
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Aop_g26991 TRX P, TRX z cofactor of plastid-encoded RNA polymerase *(PAP10/TrxZ)... 0.03 OrthoFinder output from all 47 species
Azfi_s0392.g067794 TRX P, TRX z cofactor of plastid-encoded RNA polymerase *(PAP10/TrxZ)... 0.08 OrthoFinder output from all 47 species
Len_g03604 TRX P, TRX z cofactor of plastid-encoded RNA polymerase *(PAP10/TrxZ)... 0.03 OrthoFinder output from all 47 species
Msp_g09761 TRX P, TRX z cofactor of plastid-encoded RNA polymerase *(PAP10/TrxZ)... 0.03 OrthoFinder output from all 47 species
Ppi_g01669 TRX P, TRX z cofactor of plastid-encoded RNA polymerase *(PAP10/TrxZ)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 71 160
No external refs found!