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  5. Azfi_s1959.g108384

Azfi_s1959.g108384 (ATRBP31, CP31, ATRBP33, RBP31)


Aliases : ATRBP31, CP31, ATRBP33, RBP31

Description : not classified & original description: CDS=169-1023


Gene families : OG0000715 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000715_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s1959.g108384
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT3G53460 CP29 chloroplast RNA-binding protein 29 0.04 OrthoFinder output from all 47 species
Aop_g07142 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0444.g070620 ATRBP31, CP31,... not classified & original description: CDS=17-1102 0.12 OrthoFinder output from all 47 species
Cba_g67827 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10561 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_00173 CP31B RNA editing factor (CP31) 0.03 OrthoFinder output from all 47 species
Gb_05747 PDE322, CP33 component psPSRP2 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Ore_g11334 CP31B not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06203 No alias plastidial ribonucleoprotein *(CP33a) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g33947 No alias plastidial ribonucleoprotein *(CP33a) & original... 0.03 OrthoFinder output from all 47 species
Sam_g10911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g23920 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g07686 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e001824_P002 Zm00001e001824 RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e003947_P001 ATRBP31, CP31,... RNA editing factor (CP31) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 199 269
IPR000504 RRM_dom 98 168
No external refs found!