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  5. Azfi_s2045.g108870

Azfi_s2045.g108870 (ATRZ-1A)


Aliases : ATRZ-1A

Description : not classified & original description: CDS=187-1173


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s2045.g108870

Target Alias Description ECC score Gene Family Method Actions
Als_g07993 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04562 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g18834 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g32569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001247_P001 Zm00001e001247 Organelle RRM domain-containing protein 2, mitochondrial... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019566 arabinose metabolic process IEP HCCA
BP GO:0046373 L-arabinose metabolic process IEP HCCA
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 72 114
IPR001878 Znf_CCHC 181 195
No external refs found!