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  5. Azfi_s2054.g108918

Azfi_s2054.g108918 (CRR22)


Aliases : CRR22

Description : not classified & original description: CDS=1-2412


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s2054.g108918
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Aev_g11489 OTP84 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene65137.t1 Aspi01Gene65137 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011650 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2676 0.04 OrthoFinder output from all 47 species
Azfi_s0073.g037173 No alias not classified & original description: CDS=1-2688 0.13 OrthoFinder output from all 47 species
Cba_g78232 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.16G072300.1 Ceric.16G072300 not classified & original description: pacid=50590183... 0.06 OrthoFinder output from all 47 species
GSVIVT01000034001 MEF19 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Len_g05357 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g24471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g47291 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06203 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g15801 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g38544 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g03413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03426 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g10914 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12220 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12950 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g12992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13442 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g13599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63818 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g54414 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000561 No alias not classified & original description: CDS=191-3046 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 144 189
IPR002885 Pentatricopeptide_repeat 347 394
IPR002885 Pentatricopeptide_repeat 448 495
IPR002885 Pentatricopeptide_repeat 247 291
IPR002885 Pentatricopeptide_repeat 649 696
IPR002885 Pentatricopeptide_repeat 552 596
IPR002885 Pentatricopeptide_repeat 624 646
IPR002885 Pentatricopeptide_repeat 422 446
No external refs found!