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  5. Sacu_v1.1_s0001.g000096

Sacu_v1.1_s0001.g000096 (LBD27, SCP)


Aliases : LBD27, SCP

Description : AS2/LOB-type transcription factor & original description: CDS=1-981


Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000096
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT2G42430 LBD16, ASL18 lateral organ boundaries-domain 16 0.02 OrthoFinder output from all 47 species
Adi_g060456 LBD31 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g00715 LBD4 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g23741 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27434 LBD25 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g29995 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33932 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g04915 AS2 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19447 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene43012.t1 AS2, Aspi01Gene43012 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65362.t1 AS2, Aspi01Gene65362 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0225.g058902 LBD4 AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0305.g063899 LBD15, ASL11 AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g42517 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G082600.1 AS2, Ceric.01G082600 AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g06666 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02061 AS2 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g32393 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003547001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01027620001 LBD19 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
Gb_20398 LBD15, ASL11 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Gb_25346 LBD4 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
LOC_Os10g07510.1 LBD18, LOC_Os10g07510 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_88659g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp4g02620.1 LBD12, ASL5, PCK1 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Mp4g10500.1 LBD25 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Mp7g14810.1 LBD25 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Mp8g11560.1 LBD20 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Msp_g43952 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g44204 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43400 LBD22 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30887 LBD4 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60181 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g091420.2.1 LBD18, Solyc01g091420 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc02g065150.2.1 ASL1, LBD36,... transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Solyc02g086480.1.1 LOB, Solyc02g086480 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Solyc06g050950.3.1 LBD12, ASL5,... transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Solyc11g072470.3.1 LBD1, Solyc11g072470 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Spa_g03009 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g06126 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 10 105
No external refs found!