1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0001.g000708

Sacu_v1.1_s0001.g000708


Description : component *(eL34) of large ribosomal-subunit (LSU) proteome & original description: CDS=1-402


Gene families : OG0000940 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000940_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000708

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00260490 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
AMTR_s00010p00260730 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Ala_g05903 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g25989 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene60347.t1 Aspi01Gene60347 component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000632.3 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre16.g661050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Dac_g02443 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01011419001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g27402 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_109553g0010 No alias component RPL34 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_175574g0010 No alias component RPL34 of LSU proteome component 0.02 OrthoFinder output from all 47 species
MA_7581523g0010 No alias component RPL34 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Msp_g33299 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g10504 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g27766 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c11_2940V3.1 RPL34, Pp3c11_2940 Ribosomal protein L34e superfamily protein 0.03 OrthoFinder output from all 47 species
Pp3c1_1800V3.1 RPL34, Pp3c1_1800 Ribosomal protein L34e superfamily protein 0.01 OrthoFinder output from all 47 species
Pp3c25_11980V3.1 Pp3c25_11980 Ribosomal protein L34e superfamily protein 0.02 OrthoFinder output from all 47 species
Pp3c2_34570V3.1 Pp3c2_34570 Ribosomal protein L34e superfamily protein 0.02 OrthoFinder output from all 47 species
Pp3c7_21380V3.1 Pp3c7_21380 Ribosomal protein L34e superfamily protein 0.03 OrthoFinder output from all 47 species
Sam_g35945 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g41835 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Solyc05g007560.3.1 Solyc05g007560 component RPL34 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc06g069860.4.1 Solyc06g069860 component RPL34 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Spa_g28558 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g26519 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR008195 Ribosomal_L34Ae 1 90
No external refs found!