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  5. Sacu_v1.1_s0002.g000958

Sacu_v1.1_s0002.g000958


Description : not classified & original description: CDS=1-3216


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0002.g000958
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
AT2G40720 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g018203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069125 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g11263 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g24804 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g03700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30199 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g28417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30154.t1 Aspi01Gene30154 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34713.t1 Aspi01Gene34713 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0016.g014262 No alias not classified & original description: CDS=1-4500 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g016133 No alias ssDNA-binding protein *(OSB) & original description: CDS=1-2574 0.04 OrthoFinder output from all 47 species
Azfi_s0245.g060017 No alias not classified & original description: CDS=1-2076 0.02 OrthoFinder output from all 47 species
Dde_g21312 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21502 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010869001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Msp_g15230 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g42801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05658 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g098480.3.1 Solyc01g098480 Pentatricopeptide repeat-containing protein At2g21090... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005875 microtubule associated complex IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 176 197
IPR002885 Pentatricopeptide_repeat 992 1010
IPR002885 Pentatricopeptide_repeat 714 744
IPR002885 Pentatricopeptide_repeat 686 709
IPR002885 Pentatricopeptide_repeat 380 402
IPR002885 Pentatricopeptide_repeat 278 302
IPR002885 Pentatricopeptide_repeat 303 352
IPR002885 Pentatricopeptide_repeat 405 452
IPR002885 Pentatricopeptide_repeat 915 963
IPR002885 Pentatricopeptide_repeat 609 656
IPR002885 Pentatricopeptide_repeat 813 860
IPR002885 Pentatricopeptide_repeat 99 146
IPR002885 Pentatricopeptide_repeat 507 554
IPR002885 Pentatricopeptide_repeat 202 248
No external refs found!