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  5. Sacu_v1.1_s0002.g001253

Sacu_v1.1_s0002.g001253 (CH-CPN60A, CPN60A, SLP)


Aliases : CH-CPN60A, CPN60A, SLP

Description : regulatory factor SNX2 of Retromer protein recycling complex & original description: CDS=320-3748


Gene families : OG0000688 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000688_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0002.g001253

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00080200 CH-CPN60A,... External stimuli response.temperature.Hsp... 0.05 OrthoFinder output from all 47 species
AMTR_s00062p00185880 CH-CPN60A,... External stimuli response.temperature.Hsp... 0.05 OrthoFinder output from all 47 species
AMTR_s00106p00119930 CPN60B, LEN1,... External stimuli response.temperature.Hsp... 0.05 OrthoFinder output from all 47 species
AT1G26230 No alias TCP-1/cpn60 chaperonin family protein 0.03 OrthoFinder output from all 47 species
AT1G55490 CPN60B, LEN1 chaperonin 60 beta 0.03 OrthoFinder output from all 47 species
AT2G28000 CH-CPN60A, CPN60A, SLP chaperonin-60alpha 0.03 OrthoFinder output from all 47 species
Adi_g058751 CH-CPN60A, CPN60A, SLP not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10775 CPN60B, LEN1 chaperone *(Hsp60) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08982 CH-CPN60A, CPN60A, SLP chaperone *(Hsp60) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28064.t1 CPN60B, LEN1,... chaperone *(Hsp60) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000356 No alias chaperone *(Hsp60) & original description: CDS=314-2140 0.06 OrthoFinder output from all 47 species
Azfi_s0029.g024060 CPN60B, LEN1 chaperone *(Hsp60) & original description: CDS=155-2068 0.03 OrthoFinder output from all 47 species
Azfi_s0217.g058536 CPN60B, LEN1 chaperone *(Hsp60) & original description: CDS=281-2059 0.04 OrthoFinder output from all 47 species
Cba_g13701 CPN60B, LEN1 chaperone *(Hsp60) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G036700.1 CH-CPN60A,... chaperone *(Hsp60) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.21G040000.1 Ceric.21G040000 chaperone *(Hsp60) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.32G022500.1 CPN60B, LEN1,... chaperone *(Hsp60) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.34G041900.1 CPN60B, LEN1,... chaperone *(Hsp60) & original description:... 0.04 OrthoFinder output from all 47 species
Cre04.g231222 CH-CPN60A, CPN60A, SLP External stimuli response.temperature.Hsp... 0.05 OrthoFinder output from all 47 species
Cre07.g339150 No alias External stimuli response.temperature.Hsp... 0.06 OrthoFinder output from all 47 species
Cre17.g741450 CPN60B, LEN1 External stimuli response.temperature.Hsp... 0.03 OrthoFinder output from all 47 species
Dac_g15357 CPN60B, LEN1 chaperone *(Hsp60) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08839 CPN60B, LEN1 chaperone *(Hsp60) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07618 CPN60B, LEN1 chaperone *(Hsp60) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26759 CH-CPN60A, CPN60A, SLP chaperone *(Hsp60) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g37829 No alias chaperone *(Hsp60) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017032001 No alias External stimuli response.temperature.Hsp... 0.04 OrthoFinder output from all 47 species
GSVIVT01025490001 No alias External stimuli response.temperature.Hsp... 0.04 OrthoFinder output from all 47 species
GSVIVT01031526001 CH-CPN60A, CPN60A, SLP External stimuli response.temperature.Hsp... 0.05 OrthoFinder output from all 47 species
Gb_25193 No alias RuBisCO large subunit-binding protein subunit beta,... 0.04 OrthoFinder output from all 47 species
LOC_Os06g02380.2 CPN60B, LEN1,... subunit beta of Cpn60 chaperonin complex. component... 0.04 OrthoFinder output from all 47 species
LOC_Os09g38980.1 EMB3007, LOC_Os09g38980 subunit alpha of Cpn60 chaperonin complex. component... 0.03 OrthoFinder output from all 47 species
Len_g28966 CPN60B, LEN1 chaperone *(Hsp60) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g45333 CPN60B, LEN1 chaperone *(Hsp60) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g04126 CH-CPN60A, CPN60A, SLP chaperone *(Hsp60) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436772g0010 CH-CPN60A, CPN60A, SLP chaperone (Hsp60) 0.03 OrthoFinder output from all 47 species
MA_587689g0010 CH-CPN60A, CPN60A, SLP RuBisCO large subunit-binding protein subunit alpha... 0.02 OrthoFinder output from all 47 species
Mp1g21640.1 No alias subunit beta of Cpn60 chaperonin complex. component... 0.02 OrthoFinder output from all 47 species
Mp5g20470.1 CH-CPN60A, CPN60A, SLP subunit alpha of Cpn60 chaperonin complex. component... 0.02 OrthoFinder output from all 47 species
Msp_g08431 CPN60B, LEN1 chaperone *(Hsp60) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c24_12180V3.1 CH-CPN60A,... chaperonin-60alpha 0.02 OrthoFinder output from all 47 species
Pp3c8_16290V3.1 CH-CPN60A,... chaperonin-60alpha 0.01 OrthoFinder output from all 47 species
Ppi_g14667 CH-CPN60A, CPN60A, SLP chaperone *(Hsp60) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39492 No alias chaperone *(Hsp60) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g028810.3.1 Solyc01g028810 subunit beta of Cpn60 chaperonin complex. component... 0.07 OrthoFinder output from all 47 species
Solyc03g120850.4.1 CPN60B, LEN1,... subunit beta of Cpn60 chaperonin complex. component... 0.04 OrthoFinder output from all 47 species
Spa_g07167 CH-CPN60A, CPN60A, SLP chaperone *(Hsp60) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g54235 CPN60B, LEN1 chaperone *(Hsp60) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e029825_P001 CPN60B, LEN1,... subunit beta of Cpn60 chaperonin complex. component... 0.04 OrthoFinder output from all 47 species
Zm00001e031536_P001 CH-CPN60A,... subunit alpha of Cpn60 chaperonin complex. component... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0035091 phosphatidylinositol binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR015404 Vps5_C 301 534
IPR001683 PX_dom 157 236
IPR002423 Cpn60/GroEL/TCP-1 691 1131
No external refs found!