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  5. Sacu_v1.1_s0003.g001701

Sacu_v1.1_s0003.g001701 (ATAGP22, AGP22)


Aliases : ATAGP22, AGP22

Description : not classified & original description: CDS=1-333


Gene families : OG0003275 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003275_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0003.g001701
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene62368.t1 AtAGP20, AGP20,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0011.g012680 No alias not classified & original description: CDS=53-286 0.03 OrthoFinder output from all 47 species
Ceric.16G056000.1 AtAGP20, AGP20,... not classified & original description: pacid=50590279... 0.03 OrthoFinder output from all 47 species
GSVIVT01027049001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_00994 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os01g46850.1 LOC_Os01g46850 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os05g12580.1 LOC_Os05g12580 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g48257 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_103726g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_120230g0010 AtAGP20, AGP20 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Ppi_g09113 AtAGP20, AGP20 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc10g011730.3.1 AtAGP20, AGP20,... no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc12g007045.1.1 AGP41, Solyc12g007045 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g03352 AGP41 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41462 AtAGP20, AGP20 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g49189 AGP16, ATAGP16 not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004664 prephenate dehydratase activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006558 L-phenylalanine metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009094 L-phenylalanine biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP HCCA
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009424 AGP16/20/22/41 31 59
No external refs found!