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  5. Sacu_v1.1_s0003.g001840

Sacu_v1.1_s0003.g001840 (PEPCK, PCK1)


Aliases : PEPCK, PCK1

Description : EC_4.1 carbon-carbon lyase & original description: CDS=1-2058


Gene families : OG0000744 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000744_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0003.g001840

Target Alias Description ECC score Gene Family Method Actions
Ehy_g14033 PEPCK, PCK1 EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Gb_00028 PEPCK, PCK1 phosphoenolpyruvate carboxykinase 0.03 OrthoFinder output from all 47 species
Len_g08286 PEPCK, PCK1 EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g27392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43067 PEPCK, PCK2 EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30180 PEPCK, PCK1 EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g58453 PEPCK, PCK1 EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006094 gluconeogenesis IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0005199 structural constituent of cell wall IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR001272 PEP_carboxykinase_ATP 484 630
IPR001272 PEP_carboxykinase_ATP 155 434
No external refs found!