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  5. Sacu_v1.1_s0004.g002214

Sacu_v1.1_s0004.g002214


Description : not classified & original description: CDS=892-2337


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0004.g002214
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00188860 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00088p00174110 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT5G47620 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g054784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g064547 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05983 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08655 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35979 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g49724 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g26376 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03820 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g32654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06166.t1 Aspi01Gene06166 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18512.t1 Aspi01Gene18512 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26270.t1 Aspi01Gene26270 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene33261.t1 Aspi01Gene33261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52588.t1 Aspi01Gene52588 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G061700.1 Ceric.28G061700 not classified & original description: pacid=50569499... 0.03 OrthoFinder output from all 47 species
Ehy_g15720 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01016027001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os07g39560.3 LOC_Os07g39560 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g09888 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g24473 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10981 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g28993 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0015098 molybdate ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015689 molybdate ion transport IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0051259 protein complex oligomerization IEP HCCA
BP GO:0051260 protein homooligomerization IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 67
IPR000504 RRM_dom 111 169
No external refs found!