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  5. Sacu_v1.1_s0005.g002598

Sacu_v1.1_s0005.g002598 (DRD3, ATNRPD1B,...)


Aliases : DRD3, ATNRPD1B, NRPD1B, NRPE1, DMS5

Description : component *(NRPE1) of RNA polymerase V complex & original description: CDS=1-3834


Gene families : OG0002547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002547_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0005.g002598

Target Alias Description ECC score Gene Family Method Actions
Ceric.1Z037800.1 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Msp_g21586 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g38982 DRD3, ATNRPD1B,... component *(NRPE1) of RNA polymerase V complex &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 816 1210
IPR007080 RNA_pol_Rpb1_1 9 385
IPR000722 RNA_pol_asu 426 583
No external refs found!