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  5. Sacu_v1.1_s0005.g002764

Sacu_v1.1_s0005.g002764


Description : not classified & original description: CDS=1-2754


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0005.g002764

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00266930 OTP81 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00195340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AMTR_s00099p00072730 MEF21,... Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
AT5G59200 OTP80 Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g005606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g024582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033331 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075673 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087380 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g097993 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06657 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10633 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37868 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04742 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08381 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g34282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g26015 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene54730.t1 Aspi01Gene54730 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75118 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G007000.1 Ceric.09G007000 not classified & original description: pacid=50586983... 0.01 OrthoFinder output from all 47 species
Ceric.09G024000.1 EMB2261, Ceric.09G024000 not classified & original description: pacid=50587738... 0.03 OrthoFinder output from all 47 species
Ceric.09G059800.1 Ceric.09G059800 not classified & original description: pacid=50588067... 0.03 OrthoFinder output from all 47 species
Dac_g30166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g41962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16109 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29335 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_33439 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 47 species
LOC_Os08g13990.1 LOC_Os08g13990 Pentatricopeptide repeat-containing protein At2g37320... 0.02 OrthoFinder output from all 47 species
Len_g25719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g34372 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g11487 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g42421 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g23742 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27844 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g01771 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06449 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17481 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23513 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34877 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g45077 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30301 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29483 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36251 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g114010.3.1 Solyc03g114010 Pentatricopeptide repeat-containing protein At2g29760,... 0.01 OrthoFinder output from all 47 species
Solyc09g061340.1.1 OTP84, Solyc09g061340 Pentatricopeptide repeat-containing protein At2g13600... 0.01 OrthoFinder output from all 47 species
Spa_g12249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g26549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 482 531
IPR002885 Pentatricopeptide_repeat 179 226
IPR002885 Pentatricopeptide_repeat 78 126
IPR002885 Pentatricopeptide_repeat 584 630
IPR046848 E_motif 700 762
IPR002885 Pentatricopeptide_repeat 659 681
IPR002885 Pentatricopeptide_repeat 384 414
IPR002885 Pentatricopeptide_repeat 255 276
No external refs found!