Sacu_v1.1_s0007.g003605 (CDC48B)

Aliases : CDC48B

Description : not classified & original description: CDS=1-351

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0007.g003605
Cluster	HCCA: Cluster_53

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00154p00076410	CDC48B,...	Cell division control protein 48 homolog B...	0.02	OrthoFinder output from all 47 species
AT3G01610	emb1354, CDC48C	cell division cycle 48C	0.03	OrthoFinder output from all 47 species
Adi_g003343	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g035605	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g04868	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07885	No alias	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os11g11340.1	CIP111, LOC_Os11g11340	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Msp_g15410	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10879	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g19659	CIP111	not classified & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	65	106
IPR003959	ATPase_AAA_core	8	41

External Links

No external refs found!