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  5. Sacu_v1.1_s0008.g004138

Sacu_v1.1_s0008.g004138


Description : not classified & original description: CDS=1-2646


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0008.g004138

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 47 species
AMTR_s00006p00257350 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.01 OrthoFinder output from all 47 species
AMTR_s00010p00260120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g74600,... 0.01 OrthoFinder output from all 47 species
AMTR_s00022p00232590 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
AMTR_s00095p00039180 OTP86,... Pentatricopeptide repeat-containing protein At3g63370,... 0.01 OrthoFinder output from all 47 species
Adi_g047468 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23769 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26069 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g35628 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene04772.t1 CRR22, Aspi01Gene04772 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18019.t1 Aspi01Gene18019 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18986.t1 MEF21, Aspi01Gene18986 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene20496.t1 CRR22, Aspi01Gene20496 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene26858.t1 Aspi01Gene26858 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28051.t1 Aspi01Gene28051 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.01 OrthoFinder output from all 47 species
Aspi01Gene29787.t2 Aspi01Gene29787 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene34782.t1 Aspi01Gene34782 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene34785.t1 Aspi01Gene34785 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene34954.t1 Aspi01Gene34954 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene35275.t1 Aspi01Gene35275 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene40269.t1 Aspi01Gene40269 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene41675.t1 CRR2, Aspi01Gene41675 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene43552.t1 Aspi01Gene43552 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene45256.t1 EMB2758, Aspi01Gene45256 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene48516.t1 Aspi01Gene48516 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene54625.t1 Aspi01Gene54625 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61170.t1 OTP84, Aspi01Gene61170 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene64480.t1 Aspi01Gene64480 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene67429.t1 Aspi01Gene67429 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000442 No alias not classified & original description: CDS=1-3240 0.02 OrthoFinder output from all 47 species
Azfi_s0008.g011298 No alias not classified & original description: CDS=1-2325 0.02 OrthoFinder output from all 47 species
Azfi_s0021.g015640 No alias not classified & original description: CDS=1-1965 0.02 OrthoFinder output from all 47 species
Azfi_s0081.g038550 EMB2758 not classified & original description: CDS=1-1851 0.02 OrthoFinder output from all 47 species
Azfi_s0094.g043495 No alias not classified & original description: CDS=1-2592 0.07 OrthoFinder output from all 47 species
Azfi_s0099.g044113 No alias not classified & original description: CDS=1-1752 0.02 OrthoFinder output from all 47 species
Azfi_s0113.g045915 CRR22 not classified & original description: CDS=197-1879 0.02 OrthoFinder output from all 47 species
Azfi_s0129.g048869 No alias not classified & original description: CDS=1-2157 0.02 OrthoFinder output from all 47 species
Ceric.12G084700.1 Ceric.12G084700 not classified & original description: pacid=50602071... 0.02 OrthoFinder output from all 47 species
Ceric.19G003900.1 Ceric.19G003900 not classified & original description: pacid=50575192... 0.01 OrthoFinder output from all 47 species
Ceric.27G000800.1 Ceric.27G000800 not classified & original description: pacid=50605275... 0.08 OrthoFinder output from all 47 species
Ceric.36G001100.1 Ceric.36G001100 not classified & original description: pacid=50568746... 0.02 OrthoFinder output from all 47 species
Cre01.g025950 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.01 OrthoFinder output from all 47 species
Dac_g05106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07128 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08450 No alias not classified & original description: none 0.14 OrthoFinder output from all 47 species
Dcu_g16522 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g37952 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g10023 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g15996 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g26542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01021576001 BRCA1, ATBRCA1 DNA damage response.BRCA1–BARD1 DNA-damage response... 0.01 OrthoFinder output from all 47 species
LOC_Os07g31000.1 LOC_Os07g31000 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Len_g18535 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g33302 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g23735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g23751 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32647 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18069 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20514 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ppi_g29768 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001920 OTP86 not classified & original description: CDS=1-2427 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003208 No alias monogalactosyldiacylglycerol lipase *(HIL1) & original... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004036 OTP84 not classified & original description: CDS=1-1773 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005856 No alias not classified & original description: CDS=1-2292 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007436 No alias not classified & original description: CDS=1-1323 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007537 No alias not classified & original description: CDS=117-2237 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007672 No alias not classified & original description: CDS=1-2547 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008203 OTP86 not classified & original description: CDS=1-2439 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008518 No alias not classified & original description: CDS=1-1671 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011022 No alias not classified & original description: CDS=1-2751 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012043 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1878 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012882 No alias not classified & original description: CDS=1-2733 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019001 No alias not classified & original description: CDS=1-2865 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0117.g021130 No alias not classified & original description: CDS=1-2961 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0144.g022971 No alias not classified & original description: CDS=343-1173 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0199.g025568 No alias not classified & original description: CDS=1-2793 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0200.g025587 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0214.g026000 No alias not classified & original description: CDS=66-1799 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0223.g026268 No alias not classified & original description: CDS=1-2328 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0226.g026331 No alias not classified & original description: CDS=1-2598 0.03 OrthoFinder output from all 47 species
Sam_g34587 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g38191 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g49275 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo107359 OTP82 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Smo117311 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Smo130420 No alias Pentatricopeptide repeat-containing protein At4g19191,... 0.02 OrthoFinder output from all 47 species
Smo25177 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Smo76411 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Smo81698 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Smo84339 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Tin_g26215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 710 737
IPR002885 Pentatricopeptide_repeat 111 141
IPR002885 Pentatricopeptide_repeat 281 306
IPR002885 Pentatricopeptide_repeat 582 605
IPR002885 Pentatricopeptide_repeat 607 654
IPR002885 Pentatricopeptide_repeat 405 451
IPR002885 Pentatricopeptide_repeat 208 255
IPR002885 Pentatricopeptide_repeat 506 554
No external refs found!