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  5. Sacu_v1.1_s0010.g004950

Sacu_v1.1_s0010.g004950


Description : pectin methylesterase & original description: CDS=716-1846


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0010.g004950
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00085870 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
AT1G05310 No alias Pectin lyase-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G07420 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g10289 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g12748 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16111 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g16363 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g17009 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18114 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20368 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g37035 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38864 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g39532 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g40489 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g41068 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16581 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g22812 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24708 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g31556 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08007 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11060 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12395 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g16629 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g21821 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g24120 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02507 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06584 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10592 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g11491 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g25292 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g26785 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g30459 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g58922 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g69965 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05795.t1 Aspi01Gene05795 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07316.t2 VGDH1, Aspi01Gene07316 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene16818.t1 Aspi01Gene16818 pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene16842.t2 Aspi01Gene16842 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene59341.t1 Aspi01Gene59341 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene59347.t1 Aspi01Gene59347 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63093.t1 Aspi01Gene63093 pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene70538.t1 Aspi01Gene70538 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008437 No alias pectin methylesterase & original description: CDS=79-1257 0.04 OrthoFinder output from all 47 species
Azfi_s0016.g014409 No alias pectin methylesterase & original description: CDS=201-1415 0.03 OrthoFinder output from all 47 species
Azfi_s0033.g024992 No alias pectin methylesterase & original description: CDS=226-1431 0.06 OrthoFinder output from all 47 species
Azfi_s0040.g026612 No alias pectin methylesterase & original description: CDS=139-1269 0.04 OrthoFinder output from all 47 species
Azfi_s0055.g033955 No alias pectin methylesterase & original description: CDS=387-1493 0.04 OrthoFinder output from all 47 species
Azfi_s0103.g044651 No alias pectin methylesterase & original description: CDS=1-1083 0.04 OrthoFinder output from all 47 species
Azfi_s0516.g074982 No alias not classified & original description: CDS=1-498 0.04 OrthoFinder output from all 47 species
Azfi_s0648.g080905 No alias pectin methylesterase & original description: CDS=1-489 0.04 OrthoFinder output from all 47 species
Cba_g03729 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11546 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75864 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G008900.1 Ceric.03G008900 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.10G071200.1 Ceric.10G071200 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.10G076400.1 Ceric.10G076400 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G006300.1 Ceric.11G006300 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G006400.1 Ceric.11G006400 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G006500.1 Ceric.11G006500 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G007100.1 Ceric.11G007100 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G007600.1 Ceric.11G007600 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G007800.1 Ceric.11G007800 not classified & original description: pacid=50595757... 0.03 OrthoFinder output from all 47 species
Ceric.11G007900.1 Ceric.11G007900 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G008400.1 Ceric.11G008400 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.13G037000.1 Ceric.13G037000 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.13G037400.1 Ceric.13G037400 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.13G037800.1 Ceric.13G037800 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.13G038200.1 Ceric.13G038200 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.15G045300.1 Ceric.15G045300 not classified & original description: pacid=50640021... 0.03 OrthoFinder output from all 47 species
Ceric.19G035800.1 Ceric.19G035800 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.19G035900.1 Ceric.19G035900 pectin methylesterase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.1Z171200.1 Ceric.1Z171200 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G056100.1 VGDH1, Ceric.21G056100 not classified & original description: pacid=50603924... 0.04 OrthoFinder output from all 47 species
Ceric.21G056200.1 Ceric.21G056200 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.37G019400.1 Ceric.37G019400 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.39G035900.1 Ceric.39G035900 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g00830 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g05020 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07534 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g11068 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11820 No alias EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Dac_g17627 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g20667 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g11350 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11729 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g14896 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g15370 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g28954 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g51672 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03735 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13696 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g20873 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25395 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g38152 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g46321 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g48343 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02245 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03343 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05158 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06587 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12392 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12470 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12472 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13223 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13224 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14386 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17111 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19236 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001327001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01018823001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 OrthoFinder output from all 47 species
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Gb_01460 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Gb_17798 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Gb_27225 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Gb_39595 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Gb_41519 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Len_g02282 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07516 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Len_g13333 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g09832 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15828 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g19805 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10267810g0010 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_10428610g0010 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_10428610g0020 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_14449g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_16389g0020 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_6149868g0010 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_66089g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp3g01170.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp5g03920.1 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
Mp5g03930.1 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
Msp_g08120 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g10586 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g38949 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44845 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00669 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03614 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07458 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08012 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11750 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13329 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27443 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05557 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06428 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09481 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g25737 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26065 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27386 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29702 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g30829 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08747 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20339 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20523 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c12_24000V3.1 Pp3c12_24000 Pectin lyase-like superfamily protein 0.01 OrthoFinder output from all 47 species
Ppi_g01944 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11138 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18465 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g25901 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29894 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g31507 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g59766 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61465 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g63851 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008023 No alias pectin methylesterase & original description: CDS=361-1506 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016099 No alias pectin methylesterase & original description: CDS=1-1224 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020122 No alias not classified & original description: CDS=269-877 0.03 OrthoFinder output from all 47 species
Sam_g11685 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g36779 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37525 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 OrthoFinder output from all 47 species
Solyc05g053680.1.1 Solyc05g053680 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc09g091730.4.1 Solyc09g091730 pectin methylesterase 0.01 OrthoFinder output from all 47 species
Spa_g07165 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g11007 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11483 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29378 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g37234 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g38344 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g40449 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40908 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g42784 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g47305 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49578 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50750 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54582 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55676 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01655 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01868 No alias pecTin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07049 No alias pecTin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g15602 No alias pecTin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g19866 No alias pecTin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20547 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g36990 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g36991 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g43829 No alias pecTin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e029074_P001 Zm00001e029074 pectin methylesterase 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 82 368
No external refs found!