Sacu_v1.1_s0011.g005262


Description : not classified & original description: CDS=144-812


Gene families : OG0000474 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000474_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0011.g005262
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
Ala_g19544 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38635 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g48346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59058 ZAR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g14065 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71170.t1 SNC1, BAL,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g39384 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23786 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g20598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g20142 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g35913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15236 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0043531 ADP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 204 227
IPR001611 Leu-rich_rpt 130 153
IPR001611 Leu-rich_rpt 134 154
IPR001611 Leu-rich_rpt 35 94
IPR002182 NB-ARC 68 212
No external refs found!