1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0012.g005600

Sacu_v1.1_s0012.g005600


Description : not classified & original description: CDS=102-1034


Gene families : OG0007776 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007776_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0012.g005600
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Adi_g048216 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g33634 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g14447 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g01662 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g00639 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cre06.g300700 No alias No description available 0.06 OrthoFinder output from all 47 species
Dac_g08796 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g12558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08554 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g16664 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g47805 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_368993g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp5g19460.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Msp_g21598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11390 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g08488 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27826 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01541 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g00685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c3_1020V3.1 Pp3c3_1020 NAD(P)-binding Rossmann-fold superfamily protein 0.03 OrthoFinder output from all 47 species
Spa_g00320 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g04988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 96 276
IPR002885 Pentatricopeptide_repeat 709 756
IPR002885 Pentatricopeptide_repeat 103 150
IPR002885 Pentatricopeptide_repeat 609 655
IPR002885 Pentatricopeptide_repeat 205 250
IPR002885 Pentatricopeptide_repeat 305 351
IPR002885 Pentatricopeptide_repeat 508 555
IPR002885 Pentatricopeptide_repeat 785 806
IPR002885 Pentatricopeptide_repeat 482 502
No external refs found!