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  5. Sacu_v1.1_s0013.g005897

Sacu_v1.1_s0013.g005897


Description : not classified & original description: CDS=1-1284


Gene families : OG0000221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0013.g005897
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AT1G01550 BPS1 Protein of unknown function (DUF793) 0.04 OrthoFinder output from all 47 species
Adi_g002011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g009056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108622 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06247 BPS1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g30848 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g15134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17617 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.22G029600.1 BPS1, Ceric.22G029600 not classified & original description: pacid=50614632... 0.01 OrthoFinder output from all 47 species
Ceric.31G018000.1 BPS1, Ceric.31G018000 not classified & original description: pacid=50574511... 0.03 OrthoFinder output from all 47 species
Dde_g07245 BPS1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g06609 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23107 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019411001 ROH1 No description available 0.02 OrthoFinder output from all 47 species
Gb_18309 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_18312 No alias Protein BPS1, chloroplastic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os02g01930.1 ROH1, LOC_Os02g01930 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os04g59140.1 LOC_Os04g59140 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g04719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_85744g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Nbi_g31415 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g10156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10143 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10144 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g094950.3.1 Solyc01g094950 Protein BPS1, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g12074 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g26029 BPS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009073_P001 Zm00001e009073 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e041995_P001 Zm00001e041995 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR008511 ROH1-like 46 419
No external refs found!