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  5. Sacu_v1.1_s0013.g005914

Sacu_v1.1_s0013.g005914


Description : not classified & original description: CDS=1-2298


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0013.g005914
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Ala_g12492 OTP84 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g16832 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g21473 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g33556 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g70213 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene65851.t1 Aspi01Gene65851 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27210 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42748 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g38638 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g17701 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g38488 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g34247 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11224 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g57859 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0177.g024659 No alias not classified & original description: CDS=1-642 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0237.g026572 No alias not classified & original description: CDS=1-1578 0.03 OrthoFinder output from all 47 species
Smo11063 REME1 Pentatricopeptide repeat-containing protein At2g34400... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 485 507
IPR002885 Pentatricopeptide_repeat 587 610
IPR002885 Pentatricopeptide_repeat 687 713
IPR002885 Pentatricopeptide_repeat 179 201
IPR002885 Pentatricopeptide_repeat 382 405
IPR002885 Pentatricopeptide_repeat 512 557
IPR002885 Pentatricopeptide_repeat 306 354
IPR002885 Pentatricopeptide_repeat 205 252
IPR002885 Pentatricopeptide_repeat 613 659
IPR002885 Pentatricopeptide_repeat 102 149
IPR002885 Pentatricopeptide_repeat 409 455
No external refs found!