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  5. Sacu_v1.1_s0015.g006560

Sacu_v1.1_s0015.g006560


Description : not classified & original description: CDS=1-2253


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0015.g006560

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00122p00115170 CRR21 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Adi_g008203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g010668 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g012952 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g079794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088386 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099249 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g109885 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21991 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g41951 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16629 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55180 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37596 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g69406 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009353 No alias not classified & original description: CDS=1-2883 0.04 OrthoFinder output from all 47 species
Azfi_s0045.g029919 No alias not classified & original description: CDS=1-2448 0.02 OrthoFinder output from all 47 species
Azfi_s0074.g037414 No alias not classified & original description: CDS=1-2163 0.03 OrthoFinder output from all 47 species
Azfi_s0102.g044446 No alias not classified & original description: CDS=1-741 0.02 OrthoFinder output from all 47 species
Cba_g04064 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20102 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20876 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g66834 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G036800.1 Ceric.04G036800 not classified & original description: pacid=50632550... 0.03 OrthoFinder output from all 47 species
Ceric.16G024400.1 Ceric.16G024400 not classified & original description: pacid=50589838... 0.04 OrthoFinder output from all 47 species
Ceric.18G000100.1 CRR22, Ceric.18G000100 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.18G049300.1 Ceric.18G049300 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g14700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04453 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05757 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22169 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g42048 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000719001 OSB1 Cell cycle.organelle machineries.DNA... 0.03 OrthoFinder output from all 47 species
LOC_Os02g50280.1 CRR22, LOC_Os02g50280 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g59264.1 LOC_Os03g59264 lectin chaperone (CRT) 0.02 OrthoFinder output from all 47 species
Lfl_g04966 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10431227g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_123466g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_135075g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_81514g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_9526611g0020 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Msp_g14080 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31423 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g40957 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06160 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g07857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19044 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g23619 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27832 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g41042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37890 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12221 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g61472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63498 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04620 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g33539 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g55749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59302 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g02933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14924 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16013 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16146 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16664 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17245 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17711 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26608 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g28579 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35116 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g46501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51209 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29172 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g44822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29955 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31074 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 657 678
IPR002885 Pentatricopeptide_repeat 351 371
IPR002885 Pentatricopeptide_repeat 274 321
IPR002885 Pentatricopeptide_repeat 172 219
IPR002885 Pentatricopeptide_repeat 377 422
IPR002885 Pentatricopeptide_repeat 581 627
IPR002885 Pentatricopeptide_repeat 71 117
IPR002885 Pentatricopeptide_repeat 479 525
No external refs found!